Are there any web interfaces for "docking" programs?

Noel O'Boyle [ Admin ] Apr 28, 2011

Dock Blaster – http://blaster.docking.org/

Also, isn’t there something at Uni of Indiana? I can’t find it now, but I’m pretty sure I saw a poster on it.

NN comments

Vladimir Chupakhin [ Editor ] Apr 28, 2011 (Edited Jan 31, 2013)

There is a lot web-based docking sites, even commercial one, not counting the protein-protein docking.

examples, here is just two examples: www.dockingserver.com and http://www.moltech.ru/projects/online.html

NN comments

I’m looking for non-commerical servers. Thank you very much!

Apr 28, 2011

you might want to add that bit in your question.

Apr 28, 2011

-bla-ics Yep, protein-protein is quit different from ligand-protein. Talking about BlueObelisk-Shapado-RTFM :)

Apr 28, 2011

aristegui Apr 29, 2011

Hex Server http://hexserver.loria.fr/

NN comments

Steve Wathen [ Editor ] Apr 29, 2011

PatchDock – http://bioinfo3d.cs.tau.ac.il/PatchDock/

NN comments

Vladimir Chupakhin [ Editor ] May 6, 2011

Here are the new ones based on AutoDock

1. http://docking.utmb.edu/

2. http://www.cloudnumbers.com/ – have AutoDock but it’s on beta version now

NN comments

Miquel Duran-Frigola May 9, 2011

GOLD is (yet) another option, very easy if it is your first dock, but not very flexible.

http://www.ccdc.cam.ac.uk/products/life_sciences/gold/

NN comments

Quentin Delettre from Nice, France métropolitaine Dec 5, 2012 (Edited Dec 5, 2012)

Plants

NN comments

Sandor Mark from Suomi Nov 30, 2012 (Edited Nov 30, 2012)

You can also use mcule.com's web interface for AutoDock Vina:

mcule.com/search/screen

Docking is in the free package. You need to create a free account to access it. You can dock compounds from the mcule database as well as your own compounds, and you can also combine docking with other screening steps.

For more info:

http://doc.mcule.com/doku.php?id=dockingvina

http://doc.mcule.com/doku.php?id=freepackage

NN comments

bestmilfordlock from Jaipur, भारत गणराज्य India Dec 24, 2012 (Edited Dec 24, 2012)

In the free package Docking could be included.. We need to create a free account to access it. We can dock compounds from the mcule database as well as your own compounds, and Weu can also combine docking with other screening steps.

wikipedia

NN comments

**Steve Wathen [ Editor ] from United States of America** Dec 1, 2012 (Edited Dec 13, 2012)

SwissDock has a web interface to the EADock DSS docking package.

NN comments

Any opinions and/or evaluations of this ?

Dec 13, 2012

Any opinions and/or evaluations of this ?

Dec 13, 2012

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Are there any web interfaces for "docking" programs?

10 answers

Noel O'Boyle [ Admin ] Apr 28, 2011

Vladimir Chupakhin [ Editor ] Apr 28, 2011 (Edited Jan 31, 2013)

aristegui Apr 29, 2011

Steve Wathen [ Editor ] Apr 29, 2011

Vladimir Chupakhin [ Editor ] May 6, 2011

Miquel Duran-Frigola May 9, 2011

Quentin Delettre from Nice, France métropolitaine Dec 5, 2012 (Edited Dec 5, 2012)

Sandor Mark from Suomi Nov 30, 2012 (Edited Nov 30, 2012)

bestmilfordlock from Jaipur, भारत गणराज्य India Dec 24, 2012 (Edited Dec 24, 2012)

**Steve Wathen [ Editor ] from United States of America** Dec 1, 2012 (Edited Dec 13, 2012)

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Are there any web interfaces for "docking" programs?

10 answers

Noel O'Boyle [ Admin ] Apr 28, 2011

Vladimir Chupakhin [ Editor ] Apr 28, 2011 (Edited Jan 31, 2013)

aristegui Apr 29, 2011

Steve Wathen [ Editor ] Apr 29, 2011

Vladimir Chupakhin [ Editor ] May 6, 2011

Miquel Duran-Frigola May 9, 2011

Quentin Delettre from Nice, France métropolitaine Dec 5, 2012 (Edited Dec 5, 2012)

Sandor Mark from Suomi Nov 30, 2012 (Edited Nov 30, 2012)

bestmilfordlock from Jaipur, भारत गणराज्य India Dec 24, 2012 (Edited Dec 24, 2012)

Steve Wathen [ Editor ] from United States of America Dec 1, 2012 (Edited Dec 13, 2012)

Your answer

**Steve Wathen [ Editor ] from United States of America** Dec 1, 2012 (Edited Dec 13, 2012)