Suppose I'm in the business of visualizing hundreds of molecules for a PDF file or web page. How can go about it in an automated way? The ideal, of course, is a short command-line tool that does the batch job with no interaction. Something for Python or another scripted language would also do.
All input files are in XYZ format and contain no more than 20 atoms. The output images need to be readable in both large (about 800x800) and thumbnail (about 75x75) sizes.
Imported from: http://blueobelisk.stackexchange.com/questions/38