Pharao installation: anyone else installed it?

Yesterday Silicos released the source code of the tool Pharao.

I’m trying to install it on my Mac (macosx 10.5.8).

But I have some problems.

The installaton requires Openbabel.

Openbabel is correctly installed: /usr/local/bin/babel, /usr/local/include/openbabel-2.0.

Has anyone else tried the installation on macosx?

ps: the error message is the following:

pharao-3.0.0/src/hAccFuncCalc.cpp: In function ‘std::list<OpenBabel::OBAtom, std::allocator<OpenBabel::OBAtom> > _hAccGetNeighbors(OpenBabel::OBAtom)’:

pharao-3.0.0/src/hAccFuncCalc.cpp:149: error: no match for ‘operator==’ in ‘ aa == a’

/usr/local/include/openbabel-2.0/openbabel/bitvec.h:236: note: candidates are: bool OpenBabel::operator==(const OpenBabel::OBBitVec&, const OpenBabel::OBBitVec&)

make[2]: [CMakeFiles/pharao.dir/src/hAccFuncCalc.cpp.o] Error 1

make[1]: [CMakeFiles/pharao.dir/all] Error 2

make: *** [all] Error 2

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jeremyb84 Sep 14, 2010 (Edited Sep 14, 2010)

Hi,
It could be a version problem, Pharao seems to require Open Babel 2.3 (in Pharao documentation:

Rewrote code for Open Babel API (OB version 2.3) ).

Jérémy

NN comments

Thanks, it works!… I have updated my Open Babel installation to the 2.2.99 release.

Sep 14, 2010

Matteo Floris [ Editor ] Sep 17, 2010 (Edited Sep 17, 2010)

I hope this help other people:

as suggested by the Pharao developers (Gert Thijs) I have solved in this way:

by installing the latest Openbabel from the svn, not from source.

Now it runs…

NN comments

Matteo Floris [ Editor ] Sep 17, 2010 (Edited Sep 17, 2010)

I need to open again the question: I tried the installation on a linux machine, but still there are problems.

With Openbabel 2.2.99, the cmake command runs without any error message; then, when I run “make”, I have a lot of warnings such as “warning: extra tokens at end of #endif directive”.

Finally, “[100%] Built target pharao”. Then, “make install” runs without any error or warning.

But, when I run the “pharao” command, I get this message:

> pharao

“pharao: error while loading shared libraries: libopenbabel.so.4: cannot open shared object file: No such file or directory”

NN comments

gcc version 4.2.4 (Ubuntu 4.2.4-1ubuntu4)

Sep 17, 2010

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Pharao installation: anyone else installed it?

3 answers

jeremyb84 Sep 14, 2010 (Edited Sep 14, 2010)

Matteo Floris [ Editor ] Sep 17, 2010 (Edited Sep 17, 2010)

Matteo Floris [ Editor ] Sep 17, 2010 (Edited Sep 17, 2010)

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Pharao installation: anyone else installed it?

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jeremyb84 Sep 14, 2010 (Edited Sep 14, 2010)

Matteo Floris [ Editor ] Sep 17, 2010 (Edited Sep 17, 2010)

Matteo Floris [ Editor ] Sep 17, 2010 (Edited Sep 17, 2010)

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